a
    ˆù»jÏX  ã                   @   s`   d dl Z d dlZd dlmZmZ d dlmZ d dlm	Z	 dd„ Z
G dd„ dƒZG d	d
„ d
ƒZdS )é    N)Úassert_equalÚassert_allclose)Ústats)Ú	_survivalc                 C   s¸   dt fdtfg}tjdd„ t| |ƒD ƒ|d�}tj|dd�}|d } t |d ¡}| j}t |dd	¡}t 	|| | ¡}tj
| d d d	… d
d�\}}	| |	 d  }
||	 d  }|
|fS )NÚtimeÚcensoredc                 S   s   g | ]\}}||f‘qS © r   )Ú.0ÚtÚdr   r   úEE:\soccer\ml_env\Lib\site-packages\scipy/stats/tests/test_survival.pyÚ
<listcomp>   ó    z+_kaplan_meier_reference.<locals>.<listcomp>)Údtype)r   r   )Úorderr   éÿÿÿÿT)Zreturn_indexé   )ÚfloatÚintÚnpÚarrayÚzipÚsortÚlogical_notÚsizeÚarangeZcumprodÚunique)Útimesr   r   ÚdataÚdiedÚmÚnÚsfÚ_ÚindicesZ	ref_timesÚref_sfr   r   r   Ú_kaplan_meier_reference   s    r&   c                
   @   s8  e Zd Zedd„ ƒZdd„ Zdd„ Zdd„ Zd	d
„ Zdd„ Z	g d¢Z
g d¢Zg d¢Zg d¢Zg d¢Zg d¢Zg d¢Zg d¢Zg d¢Zg d¢Zg d¢Zg d¢Zg d¢Zg d¢Zg d¢Zej de
eefeeefeeefeeefeeefg¡dd„ ƒZej dg d ¢¡d!d"„ ƒZd#d$„ Zd%d&„ Zd'd(„ Z d)d*„ Z!d+d,„ Z"d-S ).ÚTestSurvivalc                 C   s`   |   |¡}|  dd|¡ tj¡}|  t ||¡¡}| j |jd�|   ¡ k}tj	 
||¡}|||fS )Nr   é   ©r   )ÚrandomÚintegersZastyper   Zint32ZpermutedÚrepeatr   r   ÚCensoredDataÚright_censored)ÚrngÚn_uniqueZunique_timesZrepeatsr   r   Úsampler   r   r   Úget_random_sample(   s    
zTestSurvival.get_random_samplec                 C   sÌ  d}t jt|d�� t dgg¡ W d   ƒ n1 s60    Y  t jt|d�� t d¡ W d   ƒ n1 sn0    Y  d}t jt|d�� t tjg¡ W d   ƒ n1 s®0    Y  d}t jt|d��* t tjj	dgdgd�¡ W d   ƒ n1 sú0    Y  d}t g d	¢¡}t jt|d�� |j
jd
d� W d   ƒ n1 �sJ0    Y  t jt|d�� |jjdd� W d   ƒ n1 �sˆ0    Y  d}t jt|d�� |j
 d¡ W d   ƒ n1 �sÈ0    Y  t jt|d��  |j ddg¡ W d   ƒ n1 �s0    Y  d}t jt|d�� |j
 ¡ }W d   ƒ n1 �sF0    Y  d}t jt|d�� |j ¡  W d   ƒ n1 �s„0    Y  t jt|d�� |j ¡  W d   ƒ n1 �s¾0    Y  d S )Nz,`sample` must be a one-dimensional sequence.©Úmatchr   z`sample` must not contain nanz5Currently, only uncensored and right-censored data...T)r   zmethod` must be one of...)r   é   é   z	ekki-ekki©ÚmethodZ	shrubberyz2confidence_level` must be a scalar between 0 and 1r   ç      à?ç333333ã?z:The confidence interval is undefined at some observations.z.Confidence interval bounds do not implement...)ÚpytestÚraisesÚ
ValueErrorr   Úecdfr   ÚnanÚNotImplementedErrorr-   Zleft_censoredÚcdfÚconfidence_intervalr"   ÚwarnsÚRuntimeWarningÚlowÚhigh)ÚselfÚmessageÚresÚcir   r   r   Útest_input_validation3   s<    ,(,8..,0**z"TestSurvival.test_input_validationc                 C   sV   t  g ¡}t|jjg ƒ t|jjg ƒ t  dg¡}t|jjdgƒ t|jjdgƒ d S )Nr   )r   r>   r   rA   Ú	quantilesÚprobabilities)rG   rI   r   r   r   Útest_edge_casesY   s    
zTestSurvival.test_edge_casesc                 C   sv   g d¢}t  |¡}t t |¡¡}t dd¡d }d| }t|jj|ƒ t|jj	|ƒ t|j
j|ƒ t|j
j	|ƒ d S )N)gìQ¸…ë@gR¸…ëQ@g=
×£p=@g®Gáz®@gÍÌÌÌÌÌ@r   é   é   )r   r>   r   r   r   r   r   rA   rL   rM   r"   ©rG   r1   rI   Zref_xZref_cdfr%   r   r   r   Útest_uniqueb   s    
zTestSurvival.test_uniquec                 C   st   g d¢}t  |¡}t t |¡¡}t g d¢¡}d| }t|jj|ƒ t|jj	|ƒ t|j
j|ƒ t|j
j	|ƒ d S )N)r   r5   r   r5   r6   r(   )gUUUUUUÅ?gUUUUUUÕ?gUUUUUUå?g«ªªªªªê?r   r   )r   r>   r   r   r   r   r   rA   rL   rM   r"   rQ   r   r   r   Útest_nonuniquen   s    
zTestSurvival.test_nonuniquec                 C   s  t j d¡}|  |d¡\}}}t |¡}|jj}|t j||d d d�d  }t	|j 
|¡|jjƒ t	|j 
|¡|jjƒ t	|j 
|d d ¡dƒ t	|j 
t j t jg¡ddgƒ t	|j 
|¡|jjƒ t	|j 
|¡|jjƒ t	|j 
|d d ¡dƒ t	|j 
t j t jg¡ddgƒ d S )Nl   ­I)û_ é   r   r   )Úappendr5   r   )r   r*   Údefault_rngr2   r   r>   rA   rL   Údiffr   ÚevaluaterM   Úinfr"   )rG   r/   r1   r#   rI   ÚxZxrr   r   r   Útest_evaluate_methodsz   s    
 z"TestSurvival.test_evaluate_methods)
é%   é+   é/   é8   é<   é>   éG   éM   éP   éQ   )
r   r   r   r   r   r   r   r   r   r   )
r   r   ç      ì?ç      è?rg   rg   rg   r9   g      Ð?r   )
é   é   é   é   é   é   rh   é    é   é(   )
r   r   r   r   r   r   r   r   r   r   )	çÍÌÌÌÌÌì?gžï§ÆK7é?çš™™™™™å?rr   gHáz®Gá?gìQ¸…ëÙ?çHáz®GÑ?rs   rs   )
é!   é   é)   é0   rw   é   r\   rw   rx   r]   )
r   r   r   r   r   r   r   r   r   r   )r   rf   rg   rg   r:   r:   r:   )é   r6   é   é   ry   é   rk   r5   é   é   ry   rl   ri   r   é
   é   rO   rP   é	   r~   )r   r   r   r   r   r   r   r   r   r   r   r   r   r   r   r   r   r   r   r   )çffffffî?r‚   gNbX9´ì?ç5^ºIë?rƒ   rƒ   rƒ   rƒ   rƒ   rƒ   gR¸…ëQè?çoƒÀÊ¡å?r„   r„   r„   çÓMbX9à?r…   )r6   rP   rh   r   rP   rP   rh   ri   rT   rk   r5   rz   r   r�   ri   rP   rh   rz   )r   r   r   r   r   r   r   r   r   r   r   r   r   r   r   r   r   r   )
gh‘í|?5î?g¦›Ä °rì?g´Èv¾Ÿç?çòÒMbXá?r†   r†   g´Èv¾Ÿ×?ç^ºI+Ç?r‡   r‡   Úcasec                 C   s”   |\}}}t j |t |¡¡}t  |¡}t|jj|dd� t	|jj
t t |¡¡ƒ t|t |¡ƒ}t	|d t t |¡¡ƒ t|d |dd� d S )Nçü©ñÒMbP?©Zatolr   r   )r   r-   r.   r   r   r>   r   r"   rM   r   rL   r   r   r&   )rG   rˆ   r   r   Úrefr1   rI   r   r   r   Ú$test_right_censored_against_examples¥   s    

z1TestSurvival.test_right_censored_against_examplesÚseed)l   €-øjï|Il   #}|4ÌIÝQl   ˆ>5Gnó?l   òe“ˆ5"c           	      C   sÄ   t j |¡}| dd¡}|  ||¡\}}}t |¡}t||ƒ}t|j	j
|d ƒ t|j	j|d ƒ tj|d�}t |¡}t |¡}t|d |j	j
ƒ t|d |jjdd� t|d |j	jdd� d S )	Nr   éd   r   r   )Ú
uncensoredç›+¡†›„=©Zrtolr5   )r   r*   rV   r+   r2   r   r>   r&   r   r"   rL   rM   r-   r   Z_ecdf_right_censoredr   rA   )	rG   r�   r/   r0   r1   r   r   rI   r‹   r   r   r   Ú4test_right_censored_against_reference_implementation´   s    



zATestSurvival.test_right_censored_against_reference_implementationc                 C   s,  | j | j }}tj |t |¡¡}t |¡}g d¢}|j 	¡ }|j
 	¡ }|jj|jj }t||dd� t|jjt |jj| dd¡ƒ t|jjt |jj| dd¡ƒ t|jjt |j
j| dd¡ƒ t|jjt |j
j| dd¡ƒ g d¢}	g d¢}
|jj	dd	�}t|jj|	d
d� t|jj|
d
d� d S )N)çú~j¼t“¸?r“   gHáz®GÁ?ç#Ûù~j¼Ä?r”   r”   r”   r”   r”   r”   g1¬ZdË?ç°rh‘í|Ï?r•   r•   r•   çmçû©ñÒÕ?r–   r‰   rŠ   r   r   )çiÿ¬U;æ?r—   gLÅÆ¼Ž¸ä?çSX© ¢êâ?r˜   r˜   r˜   r˜   r˜   r˜   g•·#œ¼Ý?çvß1<ö³×?r™   r™   r™   ç</OçŠÄ?rš   )ç–è,³Åï?r›   gXÇñC%ï?çd–=	lNî?rœ   rœ   rœ   rœ   rœ   rœ   gGÿËµhí?çyÊjºžhë?r�   r�   r�   çò•@JìÚè?rž   úlog-logr7   g�íµ ÷Æ°>)Út4Úd4r   r-   r.   r   r   r>   r"   rB   rA   rM   rE   r   ZcliprF   )rG   r   r   r1   rI   Zref_allowanceÚsf_ciÚcdf_ciZ	allowanceZref_lowZref_highr   r   r   Útest_right_censored_ciÉ   s2    


ÿÿÿÿz#TestSurvival.test_right_censored_cic                 C   s.  | j | j }}tj |t |¡¡}t |¡}t g d¢¡}t g d¢¡}|j	j
dd�}|jj
dd�}t|jj|dd� t|jj|dd� t|jjd| dd� t|jjd| dd� g d¢}	g d	¢}
|j	j
dd
d�}t|jj|	ƒ t|jj|
ƒ g d¢}	g d¢}
|j	j
d
d�}t|jj|	ƒ t|jj|
ƒ d S )N)
gÂ4Så?g n À;ùã?g–Î‡g	2Ý?çœoD÷¬kÒ?r¥   r¥   g½§rÚSrÀ?ç?T1³Ÿ?r¦   r¦   )
gÕæ!S¾ï?gn‹2dï?g Ã|yöë?çU¯²¶©ç?r§   r§   gƒmÄ“ÝLã?ç^ô¤‹Û?r¨   r¨   rŸ   r7   gñhãˆµøä>rŠ   r   )
g”‹eÀÌç?gûõÔÀCòå?g’W�ä0à?çJµ’É|Õ?r©   r©   g c£a—vÄ?ç#êè£	§?rª   rª   )
g—–x‰ ¦ï?g]Õ^L"Øî?gD%V
§dë?ç×Ô’ˆÑæ?r«   r«   g[œ<\é+â?ç¾7Ô§xáØ?r¬   r¬   rq   )r8   Úconfidence_level)
g7A�˜caë?g|X›þ§‹è?gí1�ç�á?çä£/”Ö?r®   r®   gRï¼¯ŒÂ?ç        r¯   r¯   )
ç      ð?r°   g¡±¨Œüªì?ç8Ù’`§ç?r±   r±   gñ©à×Eyâ?ç,ËªÞ~O×?r²   r²   )r­   )Út5Úd5r   r-   r.   r   r   r>   r   r"   rB   rA   r   rE   rM   rF   )rG   r   r   r1   rI   ÚlowerÚupperr¢   r£   rE   rF   r   r   r   Ú test_right_censored_ci_example_5ó   s.    

ÿz-TestSurvival.test_right_censored_ci_example_5c              
   C   sŒ  | j | j }}tj |t |¡¡}t |¡}g d¢}tjddddtjg}tjddddtjg}t 	|j
j|¡}d	}	tjt|	d
�� |j
 ¡ }
W d   ƒ n1 sž0    Y  t|
jj| dd … |dd … ƒ t|
jj| dd … |dd … ƒ tjddddtjg}tjddddtjg}t 	|j
j|¡}tjt|	d
�� |j ¡ }
W d   ƒ n1 �sT0    Y  t|
jj| dd … |dd … ƒ t|
jj| dd … |dd … ƒ dddddddddtjg
}dddddddddtjg
}t|
jj|ƒ t|
jj|ƒ tjt|	d
�� |jjdd�}
W d   ƒ n1 �s&0    Y  tjtjdddddddtjg
}tjtjddddddd tjg
}t|
jj|ƒ t|
jj|ƒ d S )!N)r\   r^   r_   rc   rd   re   r   gµ!E±¯ûª?gÜ™{²k›Õ?gÕuOÂªÖ?gY®ešá?ga§çEPî?r°   z9The confidence interval is undefined at some observationsr3   r   g|EØžªä?g¡U<ÏÝËÜ?gs‘C±¯ûª?gå­ëEPî?g3Â&J2å?gÀgEØžªä?gG<ÏÝËÜ?g !E±¯ûª?r¯   gæ­ëEPî?g3Â&J2å?rŸ   r7   gökô´›ÄØ?gutz¼Ì%Ô?g€¼
àš´?gKuËÏ€…?gò/Ÿ8’gï?g(ÈyDëÉí?go¡â(Óqê?g9–'Ôòüä?)Út1Úd1r   r-   r.   r   r   r>   r?   ZsearchsortedrA   rL   r;   rC   rD   rB   r   rE   rM   rF   r"   )rG   r   r   r1   rI   rZ   ÚfloZfupÚirH   rJ   rE   rF   r   r   r   Útest_right_censored_ci_nans%  sP    
(""*""þÿ.þþz(TestSurvival.test_right_censored_ci_nansc                 C   sÂ   t j d¡}|jdddd�}t  |¡}d|t  |¡< t |¡}t tj 	||¡¡}t
|jj|jjƒ t
|jj|jjƒ t
|jjd d… |jjd d… ƒ t|jjd d… |jjd d… dd	� d S )
Nl   m"ê%ª< r   rŽ   iè  r)   Tr   r�   r‘   )r   r*   rV   r+   Z
zeros_likeZargmaxr   r>   r-   r.   r   r"   rL   Z_nZ_dr   Z_sf)rG   r/   r1   r   rI   r‹   r   r   r   Ú&test_right_censored_against_uncensoredk  s    

"z3TestSurvival.test_right_censored_against_uncensoredc                 C   s²   t j d¡}| dd¡}|  ||¡\}}}t |¡}zdd lm} |j	 
¡  W n^ ttfy¬   t j d¡s¨d}tjt|d�� |j	 
¡  W d   ƒ n1 sž0    Y  Y n0 d S )Nl   ‘u!u°\xD r   rŽ   r   z
2.0.0.dev0z2matplotlib must be installed to use method `plot`.r3   )r   r*   rV   r+   r2   r   r>   Zmatplotlib.pyplotZpyplotr"   ZplotÚModuleNotFoundErrorÚImportErrorÚ__version__Ú
startswithr;   r<   )rG   r/   r0   r1   r#   rI   ZpltrH   r   r   r   Útest_plot_ivw  s    
zTestSurvival.test_plot_ivN)#Ú__name__Ú
__module__Ú__qualname__Ústaticmethodr2   rK   rN   rR   rS   r[   r¸   r¹   Úr1Út2Zd2Úr2Zt3Zd3Zr3r    r¡   Zr4r³   r´   Zr5r;   ÚmarkÚparametrizerŒ   r’   r¤   r·   r¼   r½   rÂ   r   r   r   r   r'   &   sB   

&	 ÿ

*2Fr'   c                
   @   sœ   e Zd Zej dg d¢g d¢gg d¢g d¢gdg d¢fg d¢g d	¢gg d
¢g d¢gdg d¢fg d¢g d¢gg d¢g d¢gdg d¢fg¡dd„ ƒZdd„ ZdS )ÚTestLogRankzx, y, statistic, pvalue)rh   ri   rj   rk   rl   rm   )rh   rn   ro   rp   )rt   ru   rv   )rw   rw   rx   r\   rw   rx   r]   gK±è÷©@)gÜ‡í~�?gÆØá%Ýï?g �í~q?)r{   rO   rP   r(   )ro   r{   r~   rk   )é   rl   é   )rl   rT   r}   r}   rP   g8v\¸ê?)g®ìÊÓ×?g‰hG:ê?gÝ]âÊÓÇ?)rO   r|   rl   é   r\   é&   é1   é2   é?   éO   éV   éb   éÊ   éÛ   )é   r^   rd   éR   rÚ   é•   )r   r   ri   r|   rk   rT   rÍ   r~   r}   ro   ry   ry   rx   ru   rÏ   rt   é#   r\   rp   rp   é.   rw   éL   re   rÚ   é[   ép   éµ   )é"   rp   éF   gð….ƒü@)gžJVáÚQy?g8j^áÚQi?g–¡%®æï?c                 C   s~   t j|d |d d�}t j|d |d d�}tg d¢ƒD ]@\}}t j|||d�}t|jd |dd� t|j|| dd� q8d S )	Nr   r   )r�   Úright)z	two-sidedÚlessZgreater)rZ   ÚyÚalternativer5   g»½×Ùß|Û=rŠ   )r   r-   Ú	enumerateÚlogrankr   Ú	statisticÚpvalue)rG   rZ   ræ   rê   rë   r»   rç   rI   r   r   r   Útest_log_rankŒ  s    5zTestLogRank.test_log_rankc                 C   sž   t  ddg¡}d}tjt|d��$ t j|ddggd� W d   ƒ n1 sJ0    Y  d}tjt|d��$ t jddgg|d� W d   ƒ n1 s�0    Y  d S )Nr   r5   z`y` must ber3   )rZ   ræ   z`x` must be)r   r-   r;   r<   r=   ré   )rG   r1   Úmsgr   r   r   Útest_raisesÍ  s    2zTestLogRank.test_raisesN)rÃ   rÄ   rÅ   r;   rÊ   rË   rì   rî   r   r   r   r   rÌ   Š  s2   ùû
ÿþ÷ðè4
rÌ   )r;   Únumpyr   Znumpy.testingr   r   Zscipyr   Zscipy.statsr   r&   r'   rÌ   r   r   r   r   Ú<module>   s     f